Population Genetics

Team

Dr. Isabelle Dupanloup Duperret

Bioinformatician

Curriculum vitae

2009-2016 Bioinformatician. Population genetics, University of Bern
2005-2007 Postdoctoral position at Population genetics, University of Bern
2003-2005 Postdoctoral position with Prof. Henrik Kaessmann, University of Lausanne
1999-2003 Postdoctoral position with Prof. Guido Barbujani and Dr Giorgio Bertorelle, University of Ferrara
1993-1999 Ph.D. Thesis with Prof. Andre Langaney and Prof. Laurent Excoffier, LGB, University of Geneva
1994-1997 Certificate of specialization in Computer Science, University of Geneva
1991-1993 Master Degree in Biology, University of Geneva
1987-1991
 Undergraduate Degree in Biology, University of Geneva

Selected publications

Journal articles

  • Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergstrom A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH & et al. (2016) A genomic history of Aboriginal Australia. Nature 538: 207-214 [Abstract and pdf]
  • Henn BM, Botigue LR, Peischl S , Dupanloup I, Lipatov M , Maples BK , Martin AR , Musharoff S, Cann H , Snyder M , Excoffier L , Kidd JM & Bustamante CD (2016) Distance from Sub-Saharan Africa Predicts Mutational Load in Diverse Human Genomes. PNAS 113: E440-9 [Abstract and pdf]
  • Daub JT, Dupanloup I Robinson-Rechavi M & Excoffier L (2015) Inference of evolutionary forces acting on human biological pathways. Genome Biology and Evolution 7: 1546–1558 [Abstract and pdf]
  • Schubert M, Jonsson H, Chang D, Der Sarkissian C, Ermini L, Ginolhac A, Albrechtsen A, Dupanloup I, Foucal A, Petersen B, Fumagalli M & et al. (2014) Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings of the National Academy of Sciences, USA 111(52): E5661-9
  • Excoffier L, Dupanloup I, Huerta-Sanchez E, Sousa VC & Foll M (2013) Robust demographic inference from genomic and SNP data. PLOS Genetics 9: e1003905 [Abstract and pdf]
  • Peischl S, Dupanloup I, Kirkpatrick M & Excoffier L (2013) On the accumulation of deleterious mutations during range expansions. Molecular Ecology 22: 5972-5982 [Abstract and pdf]
  • Daub JT, Hofer T, Cutivet E, Dupanloup I, Quintana-Murci L, Robinson-Rechavi M & Excoffier L (2013) Evidence for Polygenic Adaptation to Pathogens in the Human Genome Molecular Biology And Evolution 30 (7): 1544-1558 [Abstract]
  • Wegmann D, Dupanloup I & Excoffier L (2008) Width of Gene Expression Profile Drives Alternative Splicing. PLoS ONE 3(10): e3587 [pdf]
  • Vinckenbosch N, Dupanloup I & Kaessmann H (2006) Evolutionary fate of retroposed gene copies in the human genome. Proc Natl Acad Sci U S A 103: 3220-3225
  • Dupanloup I & Kaessmann H (2006) Evolutionary simulations to detect functional lineage-specific genes. Bioinformatics 22(15): 1815-22
  • Marques A, Dupanloup I, Vinckenbosch N, Reymond A & Kaessmann H (2005) Emergence of young human genes after a burst of retroposition in primates. PLoS Biol 3(11): e357
  • Dupanloup I, Bertorelle G, Chikhi L & Barbujani G (2004) Estimating the impact of prehistoric admixture on the genome of Europeans. Mol. Biol. Evol. 21(7): 1361-72
  • Caramelli D, Lalueza-Fox C, Vernesi C, Lari M, Casoli A, Mallegni F, Chiarelli B, Dupanloup I, Bertranpetit J, Barbujani G & Bertorelle G (2003) Evidence for a genetic discontinuity between Neandertals and 24,000-year-old anatomically modern Europeans. Proc. Natl. Acad. Sci. U S A 100(11): 6593-7
  • Dupanloup I, Pereira L, Bertorelle G, Calafell F, Prata MJ, Amorim A & Barbujani G (2003) A recent shift from polygyny to monogamy in humans is suggested by the analysis of worldwide Y-chromosome diversity. J. Mol. Evol. 57(1): 85-97
  • Dupanloup I, Schneider S & Excoffier L (2002) A simulated annealing approach to define the genetic structure of populations. Mol. Ecol. 11(12): 2571-81